So i swapped out the drive, and while it seems to slove some issues i am still getting hang up but now i have logs of it. And this log is very interesting
ct 21 19:59:31 HomeNAS kernel: [ 6627.000089] ------------[ cut here ]------------
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000097] WARNING: at /build/buildd/linux-2.6.28/net/sched/sch_generic.c:226 dev_watchdog+0x219/0x230()
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000101] NETDEV WATCHDOG: eth1 (via-rhine): transmit timed out
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000104] Modules linked in: appletalk input_polldev video output it87 hwmon_vid lp i2c_viapro via_ircc ppdev via_agp irda parport_pc serio_raw agpgart shpchp pcspkr parport crc_ccitt usbhid via_rhine mii floppy fbcon tileblit font bitblit softcursor
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000135] Pid: 3100, comm: java Not tainted 2.6.28-15-server #52-Ubuntu
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000139] Call Trace:
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000151] [<c01412e0>] warn_slowpath+0x60/0x80
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000163] [<c0198bee>] ? mempool_alloc_slab+0xe/0x10
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000169] [<c0198e7c>] ? mempool_alloc+0x2c/0xd0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000177] [<c015e683>] ? getnstimeofday+0x53/0x110
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000187] [<c02d421d>] ? strlcpy+0x1d/0x60
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000197] [<c043c722>] ? netdev_drivername+0x32/0x40
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000202] [<c0450e09>] dev_watchdog+0x219/0x230
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000210] [<c044690b>] ? neigh_table_init_no_netlink+0x14b/0x1d0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000215] [<c04460e0>] ? neigh_periodic_timer+0x0/0x190
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000222] [<c014c257>] ? mod_timer+0x37/0x80
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000226] [<c0446204>] ? neigh_periodic_timer+0x124/0x190
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000231] [<c014b830>] run_timer_softirq+0x130/0x200
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000236] [<c0450bf0>] ? dev_watchdog+0x0/0x230
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000240] [<c0450bf0>] ? dev_watchdog+0x0/0x230
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000247] [<c01468f7>] __do_softirq+0x97/0x170
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000252] [<c0146a2d>] do_softirq+0x5d/0x60
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000257] [<c0146ba5>] irq_exit+0x55/0x90
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000264] [<c010c1c3>] do_IRQ+0x83/0xa0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000270] [<c019e6ed>] ? __do_page_cache_readahead+0xad/0x1d0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000275] [<c010ab13>] common_interrupt+0x23/0x28
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000280] [<c02d62e4>] ? __copy_to_user_ll+0x44/0xf0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000286] [<c019629f>] file_read_actor+0xbf/0xe0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000291] [<c0197efc>] do_generic_file_read+0x3ac/0x4b0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000296] [<c01980a3>] generic_file_aio_read+0xa3/0x210
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000301] [<c01961e0>] ? file_read_actor+0x0/0xe0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000309] [<c0133e9c>] ? enqueue_entity+0x13c/0x360
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000317] [<c01c6445>] do_sync_readv_writev+0xb5/0xf0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000324] [<c01569e0>] ? autoremove_wake_function+0x0/0x50
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000333] [<c02b1ef0>] ? apparmor_file_permission+0x20/0x30
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000343] [<c029002f>] ? security_file_permission+0xf/0x20
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000348] [<c01c66f4>] ? rw_verify_area+0x54/0xd0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000353] [<c01c718c>] do_readv_writev+0x9c/0x1c0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000358] [<c0198000>] ? generic_file_aio_read+0x0/0x210
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000364] [<c01ca222>] ? sys_fstat64+0x22/0x30
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000369] [<c01c73f7>] vfs_readv+0x47/0x60
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000373] [<c01c744d>] sys_readv+0x3d/0xa0
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000377] [<c0109eef>] sysenter_do_call+0x12/0x2f
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000381] ---[ end trace f8f199c4f67f95bb ]---
Oct 21 19:59:31 HomeNAS kernel: [ 6627.000527] eth1: Transmit timed out, status 0000, PHY status 782d, resetting...
Oct 21 19:59:31 HomeNAS kernel: [ 6627.001232] eth1: link up, 100Mbps, full-duplex, lpa 0x45E1
Oct 21 20:00:03 HomeNAS /USR/SBIN/CRON[4435]: (root) CMD ([ -x /usr/sbin/update-motd ] && /usr/sbin/update-motd hourly 2>/dev/null)
Oct 21 20:00:03 HomeNAS /USR/SBIN/CRON[4436]: (root) CMD ([ -x /usr/sbin/update-motd ] && /usr/sbin/update-motd 2>/dev/null)
Oct 21 20:00:17 HomeNAS kernel: [ 6673.000190] eth1: Transmit timed out, status 0000, PHY status 782d, resetting...
Oct 21 20:00:17 HomeNAS kernel: [ 6673.000916] eth1: link up, 100Mbps, full-duplex, lpa 0x45E1
Just as this happens the system becomes unresponsive and if i try to log in physically it just sits after taking my password some times, sometimes it justs blank