Thanks for all the information, Posmo, it's very helpful. Anyway, here's my latest information...
Piston:
The manufacturer never changed the pistons, engine builder has modified it to get the compression ratio right. Apparently this is a very common thing, and these pistons actually come as slightly too long for most applications. According to my quick calc the CR goes from 12:1 to about 11.2:1. So I will get it shortened. I called the machine shop, it's a quick job, shouldn't be more than 20-30eur.
Valves:
This is a bit tricky, the valve specs are different, the non-waisted inlets in this size are not available. There's is also difference in stem tip length and a back-cut on the inlet as illustrated above. For the exhaust I think I will just get the new valve stem tip shortened to match others and that's it. For inlets I have a few options:
1. Get 3 more valves of the new spec and have a back-cut made on all 4.
2. Shorten valve stem and make back-cut on the new valve, and machine the waist into the 3 old valves.
I'm leaning towards option 1, less machining, new parts, probably similar (or smaller) price.
But it also sounds silly to replace inlet and not exhaust valves, because it's exhaust valves which wear out more... 3 more exhaust valves are extra 45eur
Soon approaching a 4th digit, damnit!