In a 1.8T tune the real-life speeds themselves seldom increase very much, you just reach the speeds faster. The stock brakes have been sufficient for my heavy road use, the track brings out the problems. The brakes work well for a few laps, but after 3 or 4, you really notice the fading on the braking from the main straight (on my "local" track Ahvenisto).
My solution so far has been to drive 3-4 laps (warmup, 1-2 fast laps, cooldown) at a time, then letting the engine, gearbox and brakes to cool down.
If you want an easy brake upgrade, use drilled Zimmerman discs and Ferodo pads. A basic Brembo kit would be a step better, and for great brakes, Movit kits are hugely expensive, but very effective.
I recommend you get a full kit for your specific model from some manufacturer. If the brake balance of power strays too much away from the optimum (usually very close to stock balance), you can actually increase braking distances compared to stock brakes. Something to do with the too powerful side (front, usually) activating ABS (as the wheels start to lock), which pulls back the overall brake pressure, which in turn also decreases the braking power of the other, weaker (rear) end. Or something like that, just read it from somewhere.
Stock brakes have held up well so far for me, as long as track exposure has been limited to 3-4 laps at a time.
My view on brake upgrades is that they don't actually improve the stopping distance too much, they just let you brake harder and more often for a longer time without fading.
Apart from the brakes, if your Jetta has a manual gearbox, you might want to change the gearbox oils every few years, even though the manufacturer tries to assure, that that oil never needs changing (rrright).
On my -98 Passat the 2nd gear was always a bit tricky, especially when the 'box was cold. I put in Redline MT-90 oils, and the gearbox was like new. The "feel" improved by miles, and gearshift times dropped dramatically, as all the shuffling became a thing of the past.